1.            McGugan, J. R., Byrd, G. D., Roland, A. B., Caty, S. N., Kabir, N., Tapia, E. E., Trauger, S. A., Coloma, L. A., and O'Connell, L. A. (2016) Ant and Mite Diversity Drives Toxin Variation in the Little Devil Poison Frog. J Chem Ecol

2.            Deguchi, H., Banerjee, Y., Trauger, S., Siuzdak, G., Kalisiak, E., Fernandez, J. A., Hoang, L., Tran, M., Yegneswaran, S., Elias, D. J., and Griffin, J. H. (2015) Acylcarnitines are anticoagulants that inhibit factor Xa and are reduced in venous thrombosis, based on metabolomics data. Blood 126, 1595-1600

3.            Hofmann, N. A., Yang, J., Trauger, S. A., Nakayama, H., Huang, L., Strunk, D., Moses, M. A., Klagsbrun, M., Bischoff, J., and Graier, W. F. (2015) The GPR 55 agonist, L-alpha-lysophosphatidylinositol, mediates ovarian carcinoma cell-induced angiogenesis. Br J Pharmacol 172, 4107-4118

4.            Cypess, A. M., Weiner, L. S., Roberts-Toler, C., Franquet Elia, E., Kessler, S. H., Kahn, P. A., English, J., Chatman, K., Trauger, S. A., Doria, A., and Kolodny, G. M. (2015) Activation of human brown adipose tissue by a beta3-adrenergic receptor agonist. Cell Metab 21, 33-38

5.            Prothiwa, M., Syed, I., Huising, M. O., van der Meulen, T., Donaldson, C. J., Trauger, S. A., Kahn, B. B., and Saghatelian, A. (2014) Data-driven synthesis of proteolysis-resistant peptide hormones. J Am Chem Soc 136, 17710-17713

6.            Kurczy, M. E., Northen, T. R., Trauger, S. A., and Siuzdak, G. (2015) Nanostructure imaging mass spectrometry: the role of fluorocarbons in metabolite analysis and yoctomole level sensitivity. Methods Mol Biol 1203, 141-149

7.            Mayo, L., Trauger, S. A., Blain, M., Nadeau, M., Patel, B., Alvarez, J. I., Mascanfroni, I. D., Yeste, A., Kivisakk, P., Kallas, K., Ellezam, B., Bakshi, R., Prat, A., Antel, J. P., Weiner, H. L., and Quintana, F. J. (2014) Regulation of astrocyte activation by glycolipids drives chronic CNS inflammation. Nat Med 20, 1147-1156

8.            Chin, R. M., Fu, X., Pai, M. Y., Vergnes, L., Hwang, H., Deng, G., Diep, S., Lomenick, B., Meli, V. S., Monsalve, G. C., Hu, E., Whelan, S. A., Wang, J. X., Jung, G., Solis, G. M., Fazlollahi, F., Kaweeteerawat, C., Quach, A., Nili, M., Krall, A. S., Godwin, H. A., Chang, H. R., Faull, K. F., Guo, F., Jiang, M., Trauger, S. A., Saghatelian, A., Braas, D., Christofk, H. R., Clarke, C. F., Teitell, M. A., Petrascheck, M., Reue, K., Jung, M. E., Frand, A. R., and Huang, J. (2014) The metabolite alpha-ketoglutarate extends lifespan by inhibiting ATP synthase and TOR. Nature 510, 397-401

9.            Deguchi, H., Elias, D. J., Trauger, S., Zhang, H. M., Kalisiak, E., Siuzdak, G., and Griffin, J. H. (2014) Warfarin untargeted metabolomics study identifies novel procoagulant ethanolamide plasma lipids. Br J Haematol 165, 409-412

10.          Koudelka, K. J., Ippoliti, S., Medina, E., Shriver, L. P., Trauger, S. A., Catalano, C. E., and Manchester, M. (2013) Lysine addressability and mammalian cell interactions of bacteriophage lambda procapsids. Biomacromolecules 14, 4169-4176

11.          Ciolino, J. B., Stefanescu, C. F., Ross, A. E., Salvador-Culla, B., Cortez, P., Ford, E. M., Wymbs, K. A., Sprague, S. L., Mascoop, D. R., Rudina, S. S., Trauger, S. A., Cade, F., and Kohane, D. S. (2014) In vivo performance of a drug-eluting contact lens to treat glaucoma for a month. Biomaterials 35, 432-439

12.          Kirby, D. P., Buckley, M., Promise, E., Trauger, S. A., and Holdcraft, T. R. (2013) Identification of collagen-based materials in cultural heritage. Analyst 138, 4849-4858

13.          Blankman, J. L., Long, J. Z., Trauger, S. A., Siuzdak, G., and Cravatt, B. F. (2013) ABHD12 controls brain lysophosphatidylserine pathways that are deregulated in a murine model of the neurodegenerative disease PHARC. Proc Natl Acad Sci U S A 110, 1500-1505

14.          Long, J. Z., Cisar, J. S., Milliken, D., Niessen, S., Wang, C., Trauger, S. A., Siuzdak, G., and Cravatt, B. F. (2011) Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids. Nat Chem Biol 7, 763-765

15.          Lancaster, W. A., Praissman, J. L., Poole, F. L., 2nd, Cvetkovic, A., Menon, A. L., Scott, J. W., Jenney, F. E., Jr., Thorgersen, M. P., Kalisiak, E., Apon, J. V., Trauger, S. A., Siuzdak, G., Tainer, J. A., and Adams, M. W. (2011) A computational framework for proteome-wide pursuit and prediction of metalloproteins using ICP-MS and MS/MS data. BMC Bioinformatics 12, 64

16.          Powers, M. E., Smith, P. A., Roberts, T. C., Fowler, B. J., King, C. C., Trauger, S. A., Siuzdak, G., and Romesberg, F. E. (2011) Type I signal peptidase and protein secretion in Staphylococcus epidermidis. J Bacteriol 193, 340-348

17.          Pendyala, G., Trauger, S. A., Siuzdak, G., and Fox, H. S. (2011) Short communication: quantitative proteomic plasma profiling reveals activation of host defense to oxidative stress in chronic SIV and methamphetamine comorbidity. AIDS Res Hum Retroviruses 27, 179-182

18.          Kopp, F., Komatsu, T., Nomura, D. K., Trauger, S. A., Thomas, J. R., Siuzdak, G., Simon, G. M., and Cravatt, B. F. (2010) The glycerophospho metabolome and its influence on amino acid homeostasis revealed by brain metabolomics of GDE1(-/-) mice. Chem Biol 17, 831-840

19.          Cvetkovic, A., Menon, A. L., Thorgersen, M. P., Scott, J. W., Poole, F. L., 2nd, Jenney, F. E., Jr., Lancaster, W. A., Praissman, J. L., Shanmukh, S., Vaccaro, B. J., Trauger, S. A., Kalisiak, E., Apon, J. V., Siuzdak, G., Yannone, S. M., Tainer, J. A., and Adams, M. W. (2010) Microbial metalloproteomes are largely uncharacterized. Nature 466, 779-782

20.          Facciotti, M. T., Pang, W. L., Lo, F. Y., Whitehead, K., Koide, T., Masumura, K., Pan, M., Kaur, A., Larsen, D. J., Reiss, D. J., Hoang, L., Kalisiak, E., Northen, T., Trauger, S. A., Siuzdak, G., and Baliga, N. S. (2010) Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis. BMC Syst Biol 4, 64

21.          Yanes, O., Clark, J., Wong, D. M., Patti, G. J., Sanchez-Ruiz, A., Benton, H. P., Trauger, S. A., Desponts, C., Ding, S., and Siuzdak, G. (2010) Metabolic oxidation regulates embryonic stem cell differentiation. Nat Chem Biol 6, 411-417

22.          Pendyala, G., Trauger, S. A., Siuzdak, G., and Fox, H. S. (2010) Quantitative plasma proteomic profiling identifies the vitamin E binding protein afamin as a potential pathogenic factor in SIV induced CNS disease. J Proteome Res 9, 352-358

23.          Dorrell, M. I., Aguilar, E., Jacobson, R., Trauger, S. A., Friedlander, J., Siuzdak, G., and Friedlander, M. (2010) Maintaining retinal astrocytes normalizes revascularization and prevents vascular pathology associated with oxygen-induced retinopathy. Glia 58, 43-54

24.          Wikoff, W. R., Kalisak, E., Trauger, S., Manchester, M., and Siuzdak, G. (2009) Response and recovery in the plasma metabolome tracks the acute LCMV-induced immune response. J Proteome Res 8, 3578-3587

25.          Woo, H. K., Go, E. P., Hoang, L., Trauger, S. A., Bowen, B., Siuzdak, G., and Northen, T. R. (2009) Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry. Rapid Commun Mass Spectrom 23, 1849-1855

26.          Koudelka, K. J., Destito, G., Plummer, E. M., Trauger, S. A., Siuzdak, G., and Manchester, M. (2009) Endothelial targeting of cowpea mosaic virus (CPMV) via surface vimentin. PLoS Pathog 5, e1000417

27.          Zhou, H., Wu, S., Joo, J. Y., Zhu, S., Han, D. W., Lin, T., Trauger, S., Bien, G., Yao, S., Zhu, Y., Siuzdak, G., Scholer, H. R., Duan, L., and Ding, S. (2009) Generation of induced pluripotent stem cells using recombinant proteins. Cell Stem Cell 4, 381-384

28.          Pendyala, G., Trauger, S. A., Kalisiak, E., Ellis, R. J., Siuzdak, G., and Fox, H. S. (2009) Cerebrospinal fluid proteomics reveals potential pathogenic changes in the brains of SIV-infected monkeys. J Proteome Res 8, 2253-2260

29.          Kalisiak, J., Trauger, S. A., Kalisiak, E., Morita, H., Fokin, V. V., Adams, M. W., Sharpless, K. B., and Siuzdak, G. (2009) Identification of a new endogenous metabolite and the characterization of its protein interactions through an immobilization approach. J Am Chem Soc 131, 378-386

30.          Menon, A. L., Poole, F. L., 2nd, Cvetkovic, A., Trauger, S. A., Kalisiak, E., Scott, J. W., Shanmukh, S., Praissman, J., Jenney, F. E., Jr., Wikoff, W. R., Apon, J. V., Siuzdak, G., and Adams, M. W. (2009) Novel multiprotein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome. Mol Cell Proteomics 8, 735-751

31.          Bunner, A. E., Trauger, S. A., Siuzdak, G., and Williamson, J. R. (2008) Quantitative ESI-TOF analysis of macromolecular assembly kinetics. Anal Chem 80, 9379-9386

32.          Hu, Y., Suarez, J., Fricovsky, E., Wang, H., Scott, B. T., Trauger, S. A., Han, W., Hu, Y., Oyeleye, M. O., and Dillmann, W. H. (2009) Increased enzymatic O-GlcNAcylation of mitochondrial proteins impairs mitochondrial function in cardiac myocytes exposed to high glucose. J Biol Chem 284, 547-555

33.          Benton, H. P., Wong, D. M., Trauger, S. A., and Siuzdak, G. (2008) XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization. Anal Chem 80, 6382-6389

34.          Trauger, S. A., Kalisak, E., Kalisiak, J., Morita, H., Weinberg, M. V., Menon, A. L., Poole, F. L., 2nd, Adams, M. W., and Siuzdak, G. (2008) Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile. J Proteome Res 7, 1027-1035

35.          Trisler, K., Looger, L. L., Sharma, V., Baker, M., Benson, D. E., Trauger, S., Schultz, P. G., and Smider, V. V. (2007) A metalloantibody that irreversibly binds a protein antigen. J Biol Chem 282, 26344-26353

36.          Go, E. P., Uritboonthai, W., Apon, J. V., Trauger, S. A., Nordstrom, A., O'Maille, G., Brittain, S. M., Peters, E. C., and Siuzdak, G. (2007) Selective metabolite and peptide capture/mass detection using fluorous affinity tags. J Proteome Res 6, 1492-1499

37.          Go, E. P., Wikoff, W. R., Shen, Z., O'Maille, G., Morita, H., Conrads, T. P., Nordstrom, A., Trauger, S. A., Uritboonthai, W., Lucas, D. A., Chan, K. C., Veenstra, T. D., Lewicki, H., Oldstone, M. B., Schneemann, A., and Siuzdak, G. (2006) Mass spectrometry reveals specific and global molecular transformations during viral infection. J Proteome Res 5, 2405-2416

38.          Want, E. J., O'Maille, G., Smith, C. A., Brandon, T. R., Uritboonthai, W., Qin, C., Trauger, S. A., and Siuzdak, G. (2006) Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry. Anal Chem 78, 743-752

39.          Smith, C. A., O'Maille, G., Want, E. J., Qin, C., Trauger, S. A., Brandon, T. R., Custodio, D. E., Abagyan, R., and Siuzdak, G. (2005) METLIN: a metabolite mass spectral database. Ther Drug Monit 27, 747-751

40.          Saghatelian, A., Trauger, S. A., Want, E. J., Hawkins, E. G., Siuzdak, G., and Cravatt, B. F. (2004) Assignment of endogenous substrates to enzymes by global metabolite profiling. Biochemistry 43, 14332-14339

41.          Trauger, S. A., Wu, E., Bark, S. J., Nemerow, G. R., and Siuzdak, G. (2004) The identification of an adenovirus receptor by using affinity capture and mass spectrometry. Chembiochem 5, 1095-1099

42.          Trauger, S. A., Go, E. P., Shen, Z., Apon, J. V., Compton, B. J., Bouvier, E. S., Finn, M. G., and Siuzdak, G. (2004) High sensitivity and analyte capture with desorption/ionization mass spectrometry on silylated porous silicon. Anal Chem 76, 4484-4489

43.          Wu, E., Trauger, S. A., Pache, L., Mullen, T. M., von Seggern, D. J., Siuzdak, G., and Nemerow, G. R. (2004) Membrane cofactor protein is a receptor for adenoviruses associated with epidemic keratoconjunctivitis. J Virol 78, 3897-3905

44.          Bundy, J. G., Lenz, E. M., Bailey, N. J., Gavaghan, C. L., Svendsen, C., Spurgeon, D., Hankard, P. K., Osborn, D., Weeks, J. M., Trauger, S. A., Speir, P., Sanders, I., Lindon, J. C., Nicholson, J. K., and Tang, H. (2002) Metabonomic assessment of toxicity of 4-fluoroaniline, 3,5-difluoroaniline and 2-fluoro-4-methylaniline to the earthworm Eisenia veneta (Rosa): identification of new endogenous biomarkers. Environ Toxicol Chem 21, 1966-1972